NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151664_1090363

Scaffold Ga0151664_1090363


Overview

Basic Information
Taxon OID3300011256 Open in IMG/M
Scaffold IDGa0151664_1090363 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, total
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.36023Long. (o)137.9591Alt. (m)Depth (m)570
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065214Metagenome128N
F102064Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0151664_10903632F102064AGGAGGMKYLIIKKFHIKGSTIKPSYNVELASDNLALANKKLVALNLLNEDNKNYSFHIVELNEDVLVLTEDMQVA*
Ga0151664_10903633F065214N/AHCDGYLTGTGQDLHDDLKSCYFLFHDGEDKRNFDIAKFTEKLLNQDGDYRIDDQLGGDIEYLYTFDFETNYNDARHYNRVKLKSIEVNQDVGFGRGGKRKFKTLSEFQDEINKARKEVE*

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