NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151675_1043604

Scaffold Ga0151675_1043604


Overview

Basic Information
Taxon OID3300011254 Open in IMG/M
Scaffold IDGa0151675_1043604 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)36.97018Long. (o)137.37008Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039138Metagenome / Metatranscriptome164N

Sequences

Protein IDFamilyRBSSequence
Ga0151675_10436043F039138N/AVVIKGPWGDVVVENNKSLQKELNVKEDFKMISEMHKVLLHQLIFTMQETGYDIESDEFIKESGFMGEVIRAILMRDMGYNNPMSKFIDAIVGLDIKDGDRYANFDSNKLLKLLDKKDDKE

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