Scaffold Ga0151675_1042628

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1042628
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2897
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Calidifontibacillus/Schinkia group → Schinkia → Schinkia azotoformans → Schinkia azotoformans LMG 9581 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050674	Metagenome	145	N
F063088	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10426284	F063088	N/A	MYLTEKDLKFEIRQVNATINELATDQAGDITYLHQEIVELKSQMQMLTEQVELLKDKLNES*
Ga0151675_10426286	F050674	AGAAGG	MDRIVNPLNAVGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHKEYDSAVRRINAHWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSDW*