Scaffold Ga0151675_1041222

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1041222
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1263
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004988	Metagenome / Metatranscriptome	416	Y
F015532	Metagenome / Metatranscriptome	254	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10412223	F004988	N/A	MVKLVETICPRCNGNGYIVVQKEDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIVKWSRETLPEKGQ*
Ga0151675_10412224	F083388	AGGAG	MVGMLMQKRISNIEWVMTRCSPEFKEVWARKLEQLINRRVEMAYERMVENARSVH*
Ga0151675_10412225	F030928	GGAG	MREWLKTLEAYTSFSILGFTIFICLIVIVVNCKYIIKLENTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD*
Ga0151675_10412226	F015532	GAGG	MTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTASDTGLTPMAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKE