Scaffold Ga0151675_1027041

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1027041
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7177
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001740	Metagenome / Metatranscriptome	643	Y
F002344	Metagenome / Metatranscriptome	568	Y
F050305	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_102704118	F002344	N/A	MLYDKLKPHIKAKMKENAEEYKSVQWLIDKLKQKDNYSDLTIDEIRSICTFGDVWYYDLTQ*
Ga0151675_10270415	F001740	N/A	MYNPNNPSNWSWSKAFDEMEKTVNQAELTQQIINHLLNYPGEANGLYMTLTKTQQDDVYEILNQIL*
Ga0151675_10270416	F050305	N/A	MNNLNTTIDKVAMSEFDMHYHQLGDNEKQWCHDEMVNNPKWLKKDWEDPLWSMADKWKAGLPIYEEIIITYK*