Scaffold Ga0151675_1023415

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1023415
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2195
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001607	Metagenome / Metatranscriptome	664	Y
F001614	Metagenome / Metatranscriptome	663	Y
F082388	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10234152	F001614	AGGA	MLEFFGTYGGQICGFGGFLTAIAAVLYARTRVAEFERSVHDIDWQVISELSLDVAKLKKAAQKWQNNENANVKVSQKDLLERALTERLIQQSGTVQPIRKMEM*
Ga0151675_10234154	F001607	AGG	MPVIANNVSLTAGSSSTNIFDNTNYQFVNEGTEIRVSAAVVGANDGVAGSNVNYRFTINNTEFADDAIVPALVTGQPFTDGAASYRTNAVIATGQSRNRPLLVFRNQTAGTLVVKFYVFISQQA*
Ga0151675_10234155	F082388	N/A	GMQQRPQQAFIGGLAPLVGQGLGQAARLLSRPGVGGAVTGFGAGAVAEFFVDQFGQTKKLVITRKMQRDVKKLFMMSGGDFNMTAQLYRMATGRSITGEQVVQIITRTFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLAPPRRAAPRRRATTATKILQVK*