Scaffold Ga0151675_1008535

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1008535
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5547
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034543	Metagenome	174	Y
F053137	Metagenome	141	N
F082556	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_100853511	F034543	N/A	MIQIPKIDEVIAEANAKKITAYRIAKDTRLSTQTVYAYFNGERVSVRTQEVIINYINKY*
Ga0151675_100853512	F082556	N/A	MIVKLTTEQSVYIEIDGYTYYIDHSLDEPIVEYWTEEKEPITLIKNDSNTED*
Ga0151675_10085358	F053137	N/A	MNEQHLKALKCMVFAQSFVEALDDFGGTSAFKHQLKNKGNSFAKEVDKFLNDTYSNGSTDTSIVNLIEGCQDAIDNLIETSVTVTNDSQTSS*