Scaffold Ga0151675_1005861

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1005861
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6574
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F005816	Metagenome / Metatranscriptome	389	N
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_100586110	F035770	AGGGGG	MKPYKTITFGMAEFAYARHLREELGHEDEITYPNKDASKQDRDGSWLLITITGERLGTVSPNGTVRTT*
Ga0151675_100586112	F002399	AGGTGG	MSKEIRSKYKSIIGQLRKKYGLKDNTPIHKVEQIMTPKDWQAFSTALTFPNGKPTRGK*
Ga0151675_10058614	F005816	AGGAG	MDLTNFNVDASSEGKTAVEPGRHVLHWQGEEEALVEGRNGWRGCKMYFEIDGTSIRLNHTFTVGHDNPKYVDSGIKSMILMGQAMGIQEPPKDTSSAFMGKSVSAELIKDDNGYLKINEDWGKTWQSTNQKAKPVVEDDNIKAGPSEADLDAMGSTVASEDDAPF*
Ga0151675_10058619	F087206	GAGG	MSNHYNEQEMEDIQNYVLEQDRKGLLEDEITNISIMYNLHQDDDRDEILEFITEATLYEKNVGGLI*