Scaffold Ga0151675_1004029

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1004029
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2439
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038411	Metagenome / Metatranscriptome	166	N
F044429	Metagenome	154	N
F057324	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10040296	F044429	AGGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNVAQTTGFGPFPTKEDADSFRAQYYYDQIVIADIVPLNAVIPQSATELDIDFIPEAKVVDINSKINPKKH*
Ga0151675_10040297	F038411	N/A	VYINCREIGETMTQHTEKVEQVRRRNRLDNWRKGIKFSLGETINNGEDVKHTTIYNDDSQTIEYLKSDRKTETIPSPHSDDDLVDLMMRGETATAEAIIRKLAQGEDNE*
Ga0151675_10040299	F057324	AGGAG	MNINNELVKDWLDKFDGNSEITLLSEIANNNICVSGMIDSILAYHVGEVEIAEDFYKRMWRSQS*