Scaffold Ga0151675_1003956

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1003956
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5690
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010393	Metagenome / Metatranscriptome	304	N
F017728	Metagenome / Metatranscriptome	239	Y
F028945	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10039561	F010393	GGA	MGTTAERMMSARSKRTGGGSGGAFIGFDEKDIKKEFERAFKELENLHDGVTTAQIRRIARKSLKPMVKAYREEAKAGNKRDFVVYRNGGVYAEIKPKTLSKSMGVITTRVNRGATFASLSVGPRVTRSFSDSEKGGWFAHFLEYGYLQNGNYKSGIQGFARRARMKQSAGVGNEFK
Ga0151675_10039564	F028945	N/A	MKVRFLKSVSGNGFHYRVNAVVEIHSDEMLTDFLNAGFCEAIAEAPKARAKKAVKKTNTKETR*
Ga0151675_10039568	F017728	N/A	TTTNDSVHYGLNMEPVDDISVGDIIEMTRTGKEFLVESITPSGIILKECTTYVSFSRSALNERLKRNSAIHKSI*