Scaffold Ga0151675_1002857

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1002857
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4699
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019923	Metagenome	227	N
F022079	Metagenome	216	Y
F044426	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_100285712	F022079	AGAAGG	MKKYENYVVITDDKGKKQAFYNFYELIKYLDSFKMSFLPDDFTYTIHEE*
Ga0151675_10028576	F019923	GAGG	MAVDFEALDHVRAKNKAKVNEERKQMRTELVEYINKCDSYELSKLYDEYKRLRKK*
Ga0151675_10028577	F044426	AGGA	MDKNLEQLLYITGQNHANISAQSSSFGKLALIRQLITEVKNLKLDDVSRIKINIWLDKHKKQLEAE*