Scaffold Ga0151675_1002417

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1002417
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25930
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (13.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022895	Metagenome / Metatranscriptome	212	N
F068898	Metagenome / Metatranscriptome	124	N
F076041	Metagenome	118	N
F097404	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10024173	F076041	N/A	MAIVITDQPTADGLYSAYLPVKFVATEAANPAYLTFSLRTSAGAAIANVPNYVAANINNTYTFDASNYLKSIFNVLTTQGYSTTAIEELTDLYGKFEVVVKDTINSQPDVTSNEFYAFANIDGLRYLNDQTANDGINRKGMLFGSELSGDNFAPKFQGAYDRCVVFAQSPQISIQTYQVNKPNDGSTINQIAEINISSYTNKLISVPLNRTFLTTNALVPPSSTPLSKYTGFMAKHSSLGKMYFYFEDRCNIEEFVFINKYGVKENIKFQTYTYESINTKSDSYRVGGYTHTGNTNYFNTSANNVKINQDILEDYEVRGQMFPTKHIGELHDFVSSPLQWVVEDGELVPINILDGGFKMAVKSRGVEFNFKYRKAQTKPSFI*
Ga0151675_100241737	F068898	N/A	MIASKSEIKALAFSNTFDINAVKDNVIQIVEWEQVMTVLGTDLYDDVVANPGSYATLLSDYLKPYIAYNLKAYISKPNHIKTGNKGAQTAQGSNEVIANVEEAKRQAMAMATRYKKQMIAYLDKTKPVLWKGEQDSDGIINKIIIF*
Ga0151675_100241738	F097404	N/A	VQKKNQKKQRSQQRQINFPISNNVIQLPDYTEKEKIITKQGIRLISTTDNNLFPQKVSKLAKESSTLKSVINSFAEYVSYGSILTENQALESKLTDDLNKYYNWFELSKRVAKDRRTYGYGFIESVRIGGEVFIYHLDASKVRFCEYDGEHPEQVAISKDWNDNRIHPIQRTLFPNYDEEGRTIIPIFEYESGQNDYPLPVWSGAFYDAQVESLIGQYNANQFENGVTLSSILMFDFGDVTDENGEDGLKDKKYKLEQNIKGTSGGRSGKSLIVPKTGDVQPPEYVTYPMNKEGSFMDLQKMVENNIVKACSWFRSLAGLESAGALGNNQQLRNEWELAERLIQNEQDVIMGAVQKAFEGTIYEGEVEFNNQSPMNVVNDLSNITTLLQNKETIGAEAVKELLKMMGMDEQQAKIISDNDSE*
Ga0151675_100241739	F022895	N/A	MPANLSLAAVAGTNCPKTAGVKELYTIPVGDVNSITLGSDHDITNIVFKVAGDGFGKLNFKRGECEVTESMERSNEVKVNFAVANPTKEQRKSLNAIRKSCEQYMVARLYDQDLLLFVGYDEESLDEGFVAFESFESTSGRAKTDDNLFSMTMGAEQGEPLRVLSALTGASATTTTQMVTELVNATTV*