Scaffold Ga0151671_1029892

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1029892
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1626
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_10298923	F022555	AGGAG	MAITPKFKPGQLVKYGNPAHALVGLVKSTQFARRRGDPVFVLVQWCGKYRQQEEYIPQSELKLVEGS*
Ga0151671_10298924	F006383	GGAGG	MLDSTDKMWAVQQPGTLLRGRSSHHYGRLALVLEEAYAGPIPSNGYPPRQYVKMQWVATGERFEEMLVNAHNCFDIVSSCDTLGPEEN*
Ga0151671_10298925	F021674	GGTGG	MERETYNTRLKSNPKDIPVGSLLRFKKHCRKNVTIRQNGEYGILVKTINKGKYITHDVLFPNGTRCIYMPLNWEVVSYAG*
Ga0151671_10298926	F015346	GAG	MEHKLYNVGELVAVASNRVLGIITRSNYWALDEYLGGELEFVDVMFGSHESKQYPVRYLVDL*
Ga0151671_10298927	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAEHMTPLVLIEELNKSYWNVLKPDGETVFIHKSHLTKRMY*