Scaffold Ga0151671_1028932

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1028932
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4853
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002282	Metagenome	575	Y
F008817	Metagenome / Metatranscriptome	327	Y
F018288	Metagenome	236	N
F036268	Metagenome	170	Y
F069445	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_102893210	F036268	AGGA	MKGINMKNKCKDCEGKGYYTDVISTGLSDPNDPYHEPHIERCDTCQVFSDDVKAKEYHERHA*
Ga0151671_102893211	F018288	AGGAG	MKDMRELLDTFTEYEWKQAKREMTKRIPSLNIELWTMGEFQTLARFLASPDFSDIDEYRRRLH*
Ga0151671_102893212	F069445	AGGAGG	MKKEKWDGKSRPSNDTYRKNFNEIFGKKPEMDLKGTIFCKAKDCNNHLYKNESPSLKGYCLDCG*
Ga0151671_10289324	F008817	AGGAG	MKYTVVKRIHFSHANDYVTVIKEAETFEDAMKFKVAAEMLETKDSENTVQILISTDDAFDFTRKPLLLTDEVKQAS*
Ga0151671_10289326	F002282	N/A	MSEADIIEYNKLTEKLELLKKQGTPVDDRGPNDLTKQIEILEFRNEKLHKYNQKLIEEIRSLRSKLYIKEN*