Scaffold Ga0151671

Basic Information
Taxon OID	3300011253 Open in IMG/M
Scaffold ID	Ga0151671_1025075 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011253 Open in IMG/M

Scaffold ID

Ga0151671_1025075 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Toyama Prefectural University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3081
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3081

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.04027	Long. (^o)	137.37583	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan Sea near Toyama Prefecture, JAPAN

Coordinates

Lat. (^o)

37.04027

Long. (^o)

137.37583

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F026438	Metagenome	198	N
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_10250752	F004990	N/A	MELDDFYDTKKPCCVCKKGADLREGNKYYCCDHYALYVLGKPMSQIEKELNNND*
Ga0151671_10250753	F008915	N/A	MGFIVDNEIITLDLYEMQSASHLGILRCLESEKHKESWGYNYKGSLNDQIAKSISGAMGEVAASKFLKIKFEYHCNVGGVPDLIFKDLKLQVRTQLPKDNNKNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTFVLGQEQWKTTFGLDRPFCYSIPPEKLTPIELLKNGTWN*
Ga0151671_10250754	F059875	N/A	MKVLVLIFGVITNDGQIDLVKVPKSELKNIDSCEKAIEINRKWVDNPDFDNNPLPHGFYTYKNRVIMLQYCTENGVYSG*
Ga0151671_10250755	F046315	N/A	MNKKFIEYSTNSVYKSDYVESFMKKNDLLPKEYRFRRSALDVLLKQSNKKISDFVKETYQSKEHKNKLAQISKILNPKKNAPHYFTENDLANDLAHWFNTFVDLDEVIAPNFFVGDTIQIPVWGSLFGNGQIGLNKGKDSYKINIHPKYANCYAVESKIGASMGLMRLFVPRKTIDRNADNRFSISQDKKSKIIWFGYLEPQSNGRYNILDKSYSTGKTIGSLVENIHLSWSSEIKAAYYPTIYNI*
Ga0151671_10250756	F026438	N/A	MANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAPETAQNHLNNIDDLGQYEWSDEQEQVLWTPPVNTYWLMYIDLIGKLAKAKNPEVLGDLKNKFGTVTLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQDNCEDLKQENLDKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAQEQIDRLLKHYE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151671_1025075

Overview

Ecosystem & Geography

Associated Families

Sequences