Scaffold Ga0151671_1020120

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1020120
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4548
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F018081	Metagenome	237	Y
F035770	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_102012010	F018081	GGAG	MKHFKKREFSLFNYMCDILYNFYERNGLEHCCALESRIGGNYNTEEQKEWLERFSDIWDRVEQREISK*
Ga0151671_10201204	F035770	GAG	MKKYKPITFAMAEFSYARHLRDELGHTGEIIYPNKDTSKQHTDGSWLLLTITGERLGTVSPNGTVRLT*
Ga0151671_10201207	F002399	AGGTGG	MTIKTKTHKSIIGQLRKKYGLKDNTPIDKVEIAMTPKDWKDFSEALTFPNGKPSQRGK*