NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0151671_1018541

Scaffold Ga0151671_1018541


Overview

Basic Information
Taxon OID3300011253 Open in IMG/M
Scaffold IDGa0151671_1018541 Open in IMG/M
Source Dataset NameSeawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterToyama Prefectural University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3909
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location NameJapan Sea near Toyama Prefecture, JAPAN
CoordinatesLat. (o)37.04027Long. (o)137.37583Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042021Metagenome159Y
F043087Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0151671_10185416F042021GGAGMDFDYVNKQEIKWKDLVSRGEILSLQLLAVEAKDDLEKRIAAFLVIRKKAIESGYYTFKFREKEYSTNEETRDRAMNSWANSQNISKRRALLAYRKAETNAWIYKTLLDKKKTSLFKKCKNLILIGSGMYPYSMFDIQKKYKHIKQIGIEIENKRAAIGRDLVLKSPAKDHINIITCDGYDYDYTNLLEDDLVFISCDVDNKKLMNKIMETCKAHIFICAPYEKTWLRALLVSNKITKKDGITSFLE*
Ga0151671_10185417F043087N/AMTIGFLTQYYRGLGHSQRIKFIAEQTAERDDVVIMDQLFQPPLDYKVPHTAFLGDYKIPDINKVFQFIQQAPIINFRINQFIKTIEKYKVKVLVCEGFPFCRQQFAHEYFRYLAECKKRGIKIIISVRDFPWDEPHHNQLQDWVLYTQNIVCKHYADRILVHGDKDLLPLISDRTRLANSVQIIKDIEPLLQYTGYVCDEDQPIHTQKNNNIYVSTGLNKDESVVIFKKIAEIAHYYPDHKFIMPIANKYNSIGGRKNKNIYLVEYVPELRNKLVDCAGYITYGGYNATVEILQSRVPSIIVPRQSGRKMEQFVRAFTFEPYDFFKVMTMQEFGGIKSLVDEIISGYSPNPFTYNLQGTSNTADILSEIYNGF*
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