Scaffold Ga0151671_1010744

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1010744
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4245
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F008883	Metagenome / Metatranscriptome	326	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_10107441	F001655	AGGAGG	VKQPENDHTKHFGNDGPVGNDAEIIVYYEERGPAEPVLRIPFWYYKEELGMFEHFEASVRRTAKALAESYTYWPEGYVHVQAII
Ga0151671_101074411	F008883	GGAG	MNFGRYTIWYNHEDHVWDIYDGRKGFKYPEFTINNYSRLLCGLRDRLGFLDTDRNHRRFWRVMRWWDRLRHGRR*
Ga0151671_10107443	F002858	AGGAG	MLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVIRKDLELSFDDRGNVVMPRVVLDKILFLASDELPEGDE*