Scaffold Ga0151671

Basic Information
Taxon OID	3300011253 Open in IMG/M
Scaffold ID	Ga0151671_1004701 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011253 Open in IMG/M

Scaffold ID

Ga0151671_1004701 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Toyama Prefectural University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9636
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (42.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9636

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (42.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.04027	Long. (^o)	137.37583	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan Sea near Toyama Prefecture, JAPAN

Coordinates

Lat. (^o)

37.04027

Long. (^o)

137.37583

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008026	Metagenome	340	Y
F008400	Metagenome	334	Y
F015100	Metagenome / Metatranscriptome	257	N
F020911	Metagenome	221	N
F025172	Metagenome	203	Y
F062251	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_100470110	F020911	AGGAGG	MSEEEKEEGKSYTTSFRLNESANARLMLFCELTGMRKSEVVKAAISQFIAPTIQNANVIPPYYNPRVHTCVDNNIISKDIMKNNTEAKIKDAKKEQTHAWFQAFWEVCKNQQFARRVVKTIRHNWDALENLDPKIVADKYNEHFREKGNYAKHPNSWLNDGGYDNVIDNSVSTHGLNFDVTMKHPDD*
Ga0151671_100470111	F062251	N/A	MQTLNKTMNKIIFTAMFIAAVITWIWMIFAWLIAIIGG*
Ga0151671_100470115	F015100	GGA	MPTNGKGRKDNALREETNPFLEHTTGYESVGASKREERDAEGGDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPQAITLEVSQEKVKTYKEEETWVEVTKQ*
Ga0151671_100470117	F008026	AGGAG	MGRNQGAKKYLITSKKALKLMGYKSQTSLDQFHEDEGLTCYIIDGMTCRGGRGFAWDKREINKWLKTEGRDSTEWLID*
Ga0151671_10047015	F025172	N/A	MKHAEQLFPIALQELIEIGEKGMKQREDGERAGRVARPRETRACKQVACRQTFTEKEKIQLTFNLK*
Ga0151671_10047018	F008400	AGGAG	MSKQDNSLLPKLAMGMTLFLALKFGTKLLAWWAKRQGET*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151671_1004701

Overview

Ecosystem & Geography

Associated Families

Sequences