Scaffold Ga0151671_1002361

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1002361
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3808
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F100727	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_10023614	F005751	GGA	MSDIYTIDFDPSKLSYQQEELGMRFADLDTACELMKKEEKMIIAELTVYYSRKGGYKNMTELNGLIYSDNKFKDYFDRYERTLKERNRSKIRFESFKAFRDDLRTKVVNERELAKHL*
Ga0151671_10023619	F100727	N/A	MNNPLEKKRQNYLTFYKDGIKDAILNQKKNPDNLFSAYYKKGFDDGLEIRELINEYGINNIGADNDR*