Scaffold Ga0151671_1000013

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1000013
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7454
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (68.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026124	Metagenome	199	N
F038411	Metagenome / Metatranscriptome	166	N
F044429	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_100001314	F038411	N/A	VYINCREIGETMTQHTERVEQVRRRNRLDNWRKGIKFSLGETINNGEDVKHTTIYNDDSQTIEYLKSDRKTETIPSPHSDDDLVDLMMRGETATAEAIIRKLAQGEDNE*
Ga0151671_100001315	F044429	AGGAG	MSELPPIEDRMPGCEWVLVIKYGDPYTNVAQTTGFGPFPTKEDADNFRAQYYYDQIVIADIVPLNAVIPQSATELDIDFIPEAKVVDINSKINPKKH*
Ga0151671_100001323	F026124	AGGAG	MDRQTFRLDKAALKESMADTFMGTAINLPLVWVVLTICLVFTQNAFIISVAQAGVLTVVAIIRRYCTRMWFKNKEETNVTN*