Scaffold Ga0151674_1017608

Overview

Basic Information

• Taxon OID: 3300011252
• Scaffold ID: Ga0151674_1017608
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F027854	Metagenome / Metatranscriptome	193	N
F085570	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151674_10176081	F027854	AGG	MTEKEAMKLHELIDELRAKLQKSLQEILQLRKDLDLEREEHQLTQLRYDNVKNAINKEVDRLNQRRP
Ga0151674_10176084	F085570	N/A	MDELMHIDSYKIWSYDYDYKNGKKSKTTSIKQHLISEECIDSRGLINLLLDLDNAWHNGYGKNIKVEVTFEPHEGE*
Ga0151674_10176086	F003677	AGG	MVNQSLYYFEQDVGKKVYEMEYEVNYVTKWQVLAEDRDKATDIWIENSKMDLSTEDGKDCVCSYVKDYSQVGSTKVIAEIKYNKEDDEVYADES*