Scaffold Ga0151674_1004274

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151674_1004274

Scaffold Ga0151674_1004274

Overview

Basic Information
Taxon OID	3300011252 Open in IMG/M
Scaffold ID	Ga0151674_1004274 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15896
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (65.38%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.36555	Long. (^o)	137.72861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038680	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151674_10042743	F038680	GAGG	MRDLPTENEIKESITDHNTWYRRFFRCWIDGSYLGFEHYQDNCAKVRTNYNTDKTLRAFAIKSFCEFVAHEENCSPRTVQRHLVKTVSREDLEALNVELIDDLRDLVRDDMEQTA*

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