Scaffold Ga0151674_1001032

Overview

Basic Information

• Taxon OID: 3300011252
• Scaffold ID: Ga0151674_1001032
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13785
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034707	Metagenome / Metatranscriptome	174	Y
F068132	Metagenome	125	N
F086183	Metagenome	111	N
F089410	Metagenome	109	N
F103893	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151674_100103210	F089410	N/A	MKKLEPFSKEWLEKEIKESYPAVVGMAKIRWRIYECWNWNDKPSLKKLNILWSLIPYKYLYYNRLGIHIQWPWTKKDVEG*
Ga0151674_10010322	F086183	N/A	MYIHGDIRTQMPSMKECHKAKTEVLLQDPMAKIICIPHYKEDKSAKMKGMMRDMIGMMQELGGE*
Ga0151674_100103223	F103893	AGGAGG	MTHRFDELKEQLDRVESKIDYILDPNRHDYSSYDEWLIDKQVNFRVYNNGSIE*
Ga0151674_100103226	F034707	GAG	MIWYDKDFNSNKFKSDNYVSPIADDSEMPCDTCPMLKDCEVSGKTCVALRGWYNDGKVAKAADVGRLLR*
Ga0151674_100103229	F068132	GAGG	LENNRRPAFAPMDGELIRKCIQFYIKNGPYLSESEKHHYTSLFHRMGRLNKQSHILSEPVENPDAPHLRETLFDDVLFNNKLEKYEKE*