Scaffold Ga0151674_1000455

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0151674_1000455

Scaffold Ga0151674_1000455

Overview

Basic Information
Taxon OID	3300011252 Open in IMG/M
Scaffold ID	Ga0151674_1000455 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	996
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.36555	Long. (^o)	137.72861	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048571	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151674_10004551	F048571	GGCGG	MLKNPQQKRHFMEKSEYIHLLATSPWKEMQNHFDSILPIDVKSTTKLDINTSDWVRFSIDNFDLATQKWEEPKSHYTSQANKWATINNIVGRNIHNSFELNYGMLGDGNDKLKTILGRNNIKLLGIDWDTVLVRLLVKFPGHGMAWHEDSLDSYVLKFDLPDTSKVKRYWFSIDDWQDGHVFQVSKTVLSNWKKGEAFDLPFGIGHASSNFGYRPMYSVSFTGVLDS*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.