Scaffold Ga0151676_1000365

Overview

Basic Information

• Taxon OID: 3300011251
• Scaffold ID: Ga0151676_1000365
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30777
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (25.93%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006343	Metagenome / Metatranscriptome	375	N
F007652	Metagenome / Metatranscriptome	347	Y
F015852	Metagenome / Metatranscriptome	251	Y
F047026	Metagenome	150	Y
F053137	Metagenome	141	N
F072852	Metagenome	121	N
F074810	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151676_100036519	F053137	N/A	MVFAQSFVEALDDFGGSSAFKHQLKNKGNAFAKEVDKFLNDTYSNGSTDTSIVNLIEGCQDAIDKLVETSVTVTNESQE*
Ga0151676_10003652	F047026	AGAAGG	MAIFTTFPDGEPADYNTAYNDNVWVFKTSVNTPTVRLKIVVLPENYPVEGAIGVVRIYPTTANNGNNYQTAFFDPSRFLQSYIEGYANIEGANHNGFFTNNNTHKEYYLFVEEEDKNSQGVYRALKGSIFTKIKSVWNGVRNEIDWLDFDYTDYIVNTFSTTKKFLTDSPRTIRIDSAQSYQLSFIVNERFGANQYNIKAYSGYNGTGSLVADGVVSNNIPSQDSSSRYFRIPVGTYDIGNIDPTLYTDSLLGTTPSTALANAASYTIHLEDNTNAQTSEKVTFNINETCSKYNEVRVHFLNRLGGYDAFNFYLKSIHQTDIKKDKYDQQHHDWTGFAYKYSKSSRGTTDYNVALSKKLTVNTDYLSEAESEWMEDLITSPSLYIEENNELIAVNLNQRNIVKKTSLNDKLMQYTFELSYSIKNRRQRG*
Ga0151676_100036536	F015852	N/A	LGRDIAIHLIKAYTPYLLAFLLGVIIASKGCGEPEVVTTVIEKPVPTIKYVDRWRTDTVRFVSKELVTRYDTIYSDKIVIRLDTMLLIDTFKIVETWLTEVANYDTTLNDIRLTWSNYQNRTENLKIELRKKPLGWALGVHGLVGLQSDFVENYTPLFAIGLQATVKKTYFGVNYGYNGQHFIGVGIGRNIINR*
Ga0151676_100036539	F007652	AGCAG	MNEIIYPPVRTYYICFDDERTEVKSYGWVEPNQVFETIWIFDEFTDEEQWAAELLEWDIVPEVDEQGNLVL*
Ga0151676_10003654	F006343	N/A	MRIELPNSWEGVTIEQFQALQKILAENGDEYATNVAIISIMSGVPVDEIETYSLKTYAKCMRTLSFLSEQLLGQVQKVVEFGGLRYDVITDVYKLNGGQYITLMHLMKDPDKVIDQLNEIMAVFLVPKKKTWWGWKKQPYDSNKHKEVAEAMLQAPMTIVQPLSAFFLSSYLKSAKHILESSVKKAEKIKKQAERKLRRLKQNTDG*
Ga0151676_100036541	F072852	N/A	MTDSQKMLGGRGCKVLGAAAHTSLTGYAFVAQEDTVVTVFTVGSTDSLAAYGLSTALKAGAYIVVPSGESITAITLTSGSVIVYNQ*
Ga0151676_100036545	F074810	N/A	VVALTLKERGTATYYLFKFQSDNTEAVEYCIATDSSAFPNRYNRFTITEQTSPDNLNAQVEMTTEGQWRYYVYANVSSSNLDPTGLVELESGIVKVTGTTTPVTSYSGGNSNYVVYGS*