Scaffold Ga0122742_100002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0122742_100002

Scaffold Ga0122742_100002

Overview

Basic Information
Taxon OID	3300011202 Open in IMG/M
Scaffold ID	Ga0122742_100002 Open in IMG/M
Source Dataset Name	Urban prokaryotic and eukaryotic communities from the subway in New York, USA: city subway wood -P00079
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Weill Cornell Medical College
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1021904
Total Scaffold Genes	1469 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1040 (70.80%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → City → Subway → Unclassified → City Subway Wood → Urban Prokaryotic And Eukaryotic Communities From The Subway And Surrounding Areas In New York, Usa

Source Dataset Sampling Location
Location Name	USA:New York City
Coordinates	Lat. (^o)	40.59	Long. (^o)	-73.95	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009686	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0122742_100002457	F009686	AGGA	MTEREMFEQSFKRPSNYFKLSSRQQWDIDSELGILDWQGDNLSTEDMKRFNEHYN*

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