Scaffold Ga0136587_1002595

Overview

Basic Information

• Taxon OID: 3300011188
• Scaffold ID: Ga0136587_1002595
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4726
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033647	Metagenome	177	Y
F046861	Metagenome	150	Y
F054483	Metagenome	139	N
F074456	Metagenome	119	N
F100124	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136587_100259514	F074456	N/A	MEKHTNLGDEIFTMNEPDTSWHSTLVGVVVMIAVTFIIYVVMSLIS*
Ga0136587_100259515	F033647	N/A	MTKQEQKDAAWKAYRAIRVPAFKAFKAIEEPAWKAYEAELARIDNEPDEDIIEVDGKRYQLIK*
Ga0136587_10025954	F054483	N/A	MQEYTSPMTFKKPDLSRFNFTVTGSASEQYGEQVAITAKLLGRPFFQLHKIFEKEGWTLEEITSAYQKATKHSGNCEPKIAWWANRKRRNKVGDN*
Ga0136587_10025955	F100124	AGAAG	MFWNKKEVVEVDGLPITLSKRQAFNRFTGAITSRFLAYKDGDEWRGLVGYEQFREEMDETRKRQELILDHLKLKYVPETETKEPAKLVERTNYLTVNSGNVPSWTDWVVSEGSGCDQTPTPPKKKGRSKKK*
Ga0136587_10025959	F046861	N/A	MKSFEQYLEDRCFELYPEILDDDMPDFFEVWLERQGVEGLLIYAEGWGRHIKNTILREVTNLTK*