Scaffold Ga0136587_1000044

Overview

Basic Information

• Taxon OID: 3300011188
• Scaffold ID: Ga0136587_1000044
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33717
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (85.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031446	Metagenome / Metatranscriptome	182	Y
F043342	Metagenome / Metatranscriptome	156	Y
F043418	Metagenome / Metatranscriptome	156	Y
F046310	Metagenome / Metatranscriptome	151	Y
F048914	Metagenome / Metatranscriptome	147	Y
F100939	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136587_100004414	F031446	AGGA	MSGIDLFEEAWIDANFKLYEPQADFETIDPEKRGVGRPMSEPSDITDIISTGRKRAAMLYPIFKDMKCEWAGLRYAGGGIEPIIGCAGNIIQPSKGPDKGDRHHGPDKNVINNGPNNVHRICSKCHNRWHALNNKYYGERPPADEPYIPIEEYKAHDYSSKATDKEIETNDGWWANKKKLLIDVDTN*
Ga0136587_100004418	F043418	AGGA	MGMLDDYGIDTSDIEAPSYDLEDGIYEMTVGDIYVKQGSQNFPDRSWVIIEYLVGEEGKKKSDLFELPADPENLTDRDRQKLGFYVARMLDLGVERDKVNDINREDLIGVSGTLTLYSSAGKGKNAGKVFQNIKNVKVSSSGASQPAQKIVRKTAAANPFAA*
Ga0136587_100004419	F043342	AGGA	MSDATDELKDFYNYMWGEEPTGTDTTFVYLPIEYEGKWTPYMFAWPRQREGVVRHTLKWSAIKANVFFSPALFKAANPAKENVLGSYVLWVDFDGNAPKEWSLDGENAVPRPTLVVQSSIEGHEHCYWKLDTFLDNIEVLEDRNRAIAYVMHADTSGWDADQILRPIRTTNHKRNMPVIIKEWEL*
Ga0136587_100004422	F046310	GAG	MVITVDPGDTTGIAYWTDKGELIEKEMLDFDALIERVELLEGVTVIVCEDYRLRQGKQMVQTGSKFQAVQVIGALKAYAKRHKAKMVLQDASVLTVAALHSGVKRPSDHSKSHAVDAYNHGYYYFETKGLLQPKPL*
Ga0136587_100004427	F100939	AGGAG	MYRTPGTQGNRLAPQKNENMSDEERKRKAREEAMMRRLSSAPGKTSSGMY*
Ga0136587_100004431	F048914	AGG	MTISLGQSAQIWNSDLNEFVSDDHVHMADVLQDLKPTYSLVYIPKNQRVDEQEKKKPWAIVDKPENLPEYVVRFLSDEDMKDPYKIIAWLFDGDVVRHGAENILKRIEAEDNAKKLLKSKKEIDDMEDRIDHIEFLASGGRDKKHTITHNGKKFER*