Scaffold Ga0136596_1002884

Overview

Basic Information

• Taxon OID: 3300011187
• Scaffold ID: Ga0136596_1002884
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6627
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046955	Metagenome / Metatranscriptome	150	Y
F099078	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136596_10028845	F099078	AGGAG	MSHSFDVDGKTMDVSCLYSTMKNISGGTKIFGFLPPHGRELAADEEFTVFGDVRQGLGGNRGSERSVARRDNAAFEAAIESGDLEIIQTPSPVLQDITTDAPKMLQLDNGSLSTVDPCWHNSISE*
Ga0136596_10028849	F046955	N/A	MTANTLNALKGWPQMHAVDYHTEFDSGIPSGDLPVLAGSVVSLNSSGNYILGVGTASVMPLFLFNSSDDPDVSNDGGDASTDAGVFIPISPTGQAMALVAVGAYELVSTAYVDASYSPNDPLTADLSGGSNPGKLKAGTLYTDMIVGIVSRGVVDNGYGKNALAFWPFPVFPTP*