Scaffold Ga0136596

Basic Information
Taxon OID	3300011187 Open in IMG/M
Scaffold ID	Ga0136596_1000079 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011187 Open in IMG/M

Scaffold ID

Ga0136596_1000079 Open in IMG/M

Source Dataset Name

Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56255
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (3.57%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

56255

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (3.57%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Rauer Islands

Coordinates

Lat. (^o)

-68.5558

Long. (^o)

78.1913

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002779	Metagenome / Metatranscriptome	530	Y
F006142	Metagenome / Metatranscriptome	380	Y
F017295	Metagenome / Metatranscriptome	241	Y
F071737	Metagenome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0136596_100007918	F071737	GAG	MILTREVSIKISESNFQYYDNLGYDVTIGEYLLIPIDLLSRGSHREIKCKCDTCGVEKDVLFKNYVKYGNKWGEYFCRKCSEFKRKKTLKRNFGVDYPIQNEDLKKKIKSSSSSKEKS*
Ga0136596_100007937	F006142	N/A	MERRNRLILEFTEFNMQRFNSDSVRPAAHVDNPQLSTNAFDKHQDGLRQAMSRIDDILFTLKGTTAYSSLRSKLALEDQDIVSMKILRILRANSVHYDAYVSFIIDEDEYWGKISNVLGAEPNFKSEVFNDLDLYQPKEWVIKITGIIIKTVKKWLKPEPGIYKLINDEVTCYSVETGKQLIMSEGIEIELIRSHDDKIIIKHDNNYYNLVDDNYIYFNWWFEKID*
Ga0136596_100007953	F017295	N/A	MTPQLEKVFFSYILSNRKKYYEIVKPFFFKNSTIQFVYEVMRNYMLTSTETKPPSNRQILDMVSLEDKEGIITKPMLKSILDVNLSEYNEVNFILPKFNGWVLSNRIKTGTVDVIEETRNLDNISDFAHAVESANKIKSIINEMSSVNFVQDEDMGSDFDEPENHVQDSSRFKVKCGFETIDHMLGGGWDISTLNVIMAQTNGGKCFSTKTLVNTRVKDTNIIKEIEIGELFNDISNQNSNS*
Ga0136596_10000796	F002779	N/A	MKNLKLELFNFKRELSLDQEEISNIVEGHMNVCNDESEKNIITSLNERLKPYTYDKQVKSLLEGLNTDMDEYQLLYELKNLYNVLNSKNQGELYRQPINVLLETINLQSDQDRMSKVLNELSIYEWVPEIKLFVHNLTSSPEKKSNLLSGGQGESVHTIVEQVENGHIALVKDSWFLLTEDAIEKTLLEDHIKEESELRKLRLIESAMTYAQIDNDKINFRISEHLTIGLGVDNKSIYINDDELEDESTLESLFNSPIIPIINKNFYPVIQEVAKNMDKFVELDVVKKIDNLINPYLECYAFNYKNATFLYRCDERYGNSFFQFESAIELVNEVRNELNYDLTYFYENKLGKETMVKRKLEDKEREITLKLEDVNFNIEKVKGSIQMIGESTTLSTALVNLEKRHKNLKSELGGVKELQYNEKVKLSK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0136596_1000079

Overview

Ecosystem & Geography

Associated Families

Sequences