Scaffold Ga0136596_1000057

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136596_1000057

Scaffold Ga0136596_1000057

Overview

Basic Information
Taxon OID	3300011187 Open in IMG/M
Scaffold ID	Ga0136596_1000057 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	70986
Total Scaffold Genes	107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (10.28%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136596_100005739	F002045	N/A	MDFFCVYCKTRKKFDKFVKVNKIKNKYIVDIKKIVDDEDVDFKKDKTYLKILIFNKIQQAIDKNKDIYYIPDFEKEFSVEKLLNLKKILGDNNFNVLIFYNEFRKNPKIIDNVLSNLSKFSNSQIVRDY*

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