NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136553_1018431

Scaffold Ga0136553_1018431


Overview

Basic Information
Taxon OID3300011186 Open in IMG/M
Scaffold IDGa0136553_1018431 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1542
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003552Metagenome480Y
F018841Metagenome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0136553_10184311F003552N/ANNNVNLFDDGQPQLLGHINNFNVLVGGSNVLHADARYTYQSFNNEFFNEFGVNGNQSPGLGSCLIDFKSWFKKPYYYVNCSRVPVEQQNAYRSLQIKGTNSSALAMDYMIFAIYEKNFQLDVISGTINKID*
Ga0136553_10184312F018841N/AMNVSLNLSPGQLSKLRNGHGIRIGPAMFGKGVDMIIDPMTFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGAGRKNGKISRINKARKWRDFSDETLRKGIDTGRYGYEQFQEATNPLKSEGKKVIKGISKLFGGELDGDEMEGEGFFDDIKKGYNKKVKNSALGKALRESARSAISDGYDRGAKELGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLRMAGDGKMKTAVYRRPGKIIPLY*

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