Scaffold Ga0136553_1001994

Overview

Basic Information

• Taxon OID: 3300011186
• Scaffold ID: Ga0136553_1001994
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6439
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014810	Metagenome	260	Y
F037467	Metagenome	168	Y
F045453	Metagenome	153	N
F060412	Metagenome	133	N
F079423	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136553_100199410	F045453	N/A	MRVLFILFLLIGCKAKETTVERTKTSDTLVTKSFEYVSKPIETKYTFSIECDSLGNVKEIQTFESSGLNSASVKLENNRLDLRLITGQSERKRDSVVSISDSKIDNSKKTVIYLTPLWVWPTIILLLLIIGLLIKFK*
Ga0136553_100199412	F037467	N/A	MNFIKELQTVLLLGLKTNVDAESINLENKLKGDPKSITLKELRQIFYHAGIKSVQIGNTTINI*
Ga0136553_100199414	F060412	N/A	MEVIREKINVQLIFETYKVKMNDPNIKYGWFCIHVLGTSVTLVNGWKNSTHTMSSHKKAKVLRLTGLLPDQYVNIVTLNIA*
Ga0136553_10019944	F079423	N/A	MAINKLEFNSESNLASLGQFGVRQKATGETTTTDEKFMAVYANEDSDFSTETYSGGDATFTVKLKAGGSIAGAFKNITSVTGDILCIKSEA*
Ga0136553_10019947	F014810	GGA	MSIFSDNFGIILSSTLGAIGTFFGFFRGKKVRESNANIEIGKAYELMAKQNNSFIESMTEKMNHQTKEIQELKIEVTALREENKLLLGQLKKYRK*