NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136597_1037029

Scaffold Ga0136597_1037029


Overview

Basic Information
Taxon OID3300011185 Open in IMG/M
Scaffold IDGa0136597_1037029 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007290Metagenome353Y
F096361Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0136597_10370292F096361AGGAMTQAQAVIRHTKSLSHISQKTIDAIHKAGFRVYMRTPDDSWLYFVDDADRIGYAQETRSGFVSISTVHVPNKNTGTGFILDDIPSLSADNLAKAFVIAPIWATDRDRASVKKWASWEAFKASSPFNADYKMFEVV*
Ga0136597_10370293F007290AGGTGGMKYTIALSVAAKAATCLQDNQGSMSEAEVVLHVSALDLALKAIANHNSVELPPRP*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.