Scaffold Ga0136597_1022419

Overview

Basic Information

• Taxon OID: 3300011185
• Scaffold ID: Ga0136597_1022419
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #898
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032100	Metagenome	181	N
F074127	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136597_10224192	F032100	AGGAG	MKRHTLAELIFDETALTVREFTTQLGIKPAVLQRYHNSNRVMLKIILSGYRTEVRGEVIYPN*
Ga0136597_10224193	F074127	AGG	MEDPMNSIPGRVNDLEKDLHNVKYRVNQLEHLPPKVSELERAFSVMDTTLTHIRETGVETRNLLVELNDNQKKLVGKLEGYPGALKLFTGLIVLGGVGVSIVAWFQ*