Scaffold Ga0136709_1000421

Overview

Basic Information

• Taxon OID: 3300011184
• Scaffold ID: Ga0136709_1000421
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8448
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F025684	Metagenome	200	Y
F100671	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136709_10004213	F025684	GGA	MIDDDDALPDRYTERAEATLAYRLMEYLESLGVINADHVAYLRWPPIELIEDAEAALKDET*
Ga0136709_10004214	F100671	GAGG	MAKEIKYRIDPKTGRPLHLLGDLAVVLNDDGSTVTEHYDENGRLYRTSYKSVPYPKDWTPE*
Ga0136709_10004216	F009516	GAG	MFYPMGTLAVGDVGTMPATDEGAAKRTSRNVSQYGIRNGKCFMCRTINGVTFITRLG*