Basic Information | |
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Taxon OID | 3300011183 Open in IMG/M |
Scaffold ID | Ga0136713_1005827 Open in IMG/M |
Source Dataset Name | Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1537 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indian Creek, Illinois | |||||||
Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002037 | Metagenome / Metatranscriptome | 600 | Y |
F011384 | Metagenome / Metatranscriptome | 291 | Y |
F019123 | Metagenome / Metatranscriptome | 231 | Y |
F024784 | Metagenome | 204 | Y |
F093530 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0136713_10058271 | F019123 | N/A | IYKEAFGKGDQLVTLDKIFRFARLIEQLHGVKDVH* |
Ga0136713_10058272 | F011384 | GGAG | MYTKLDDQRQAKFIISYIEANPGCSIKSIVQQCVVCRTRLKYLESQGYFTLPKWTYNNTLDKRFKNRNYVSVTVGREHGKWQEQKRY* |
Ga0136713_10058273 | F024784 | GGAG | MARAEKILDVIVWLLVVGGMGWFAYGCYQLIDLFFLRG* |
Ga0136713_10058275 | F002037 | N/A | MSKIYWVFIVVLAALAIWGTEKAIGQTTTILAPDGSVTVCQVYNGTVICV* |
Ga0136713_10058276 | F093530 | N/A | VSNAMRNAYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVDKFYKVTQDKLVILGNGIEGLKDYIDAWYQSSNNYL* |
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