Scaffold Ga0136713_1005827

Overview

Basic Information

• Taxon OID: 3300011183
• Scaffold ID: Ga0136713_1005827
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1537
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002037	Metagenome / Metatranscriptome	600	Y
F011384	Metagenome / Metatranscriptome	291	Y
F019123	Metagenome / Metatranscriptome	231	Y
F024784	Metagenome	204	Y
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136713_10058271	F019123	N/A	IYKEAFGKGDQLVTLDKIFRFARLIEQLHGVKDVH*
Ga0136713_10058272	F011384	GGAG	MYTKLDDQRQAKFIISYIEANPGCSIKSIVQQCVVCRTRLKYLESQGYFTLPKWTYNNTLDKRFKNRNYVSVTVGREHGKWQEQKRY*
Ga0136713_10058273	F024784	GGAG	MARAEKILDVIVWLLVVGGMGWFAYGCYQLIDLFFLRG*
Ga0136713_10058275	F002037	N/A	MSKIYWVFIVVLAALAIWGTEKAIGQTTTILAPDGSVTVCQVYNGTVICV*
Ga0136713_10058276	F093530	N/A	VSNAMRNAYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLVINGYSDDTGTEVDKFYKVTQDKLVILGNGIEGLKDYIDAWYQSSNNYL*