Scaffold Ga0136713_1004409

Overview

Basic Information

• Taxon OID: 3300011183
• Scaffold ID: Ga0136713_1004409
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - JTO22cm metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1756
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003194	Metagenome	501	Y
F028996	Metagenome	189	Y
F063241	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136713_10044091	F003194	GGA	MRVLRGVVYMTKSSGPRTEPWGTPQEEVCQEDRSVSHFTRKQRDDRYDLNQLRTEPWIPNQDERRVIKMSWSIVSKAAERSSRQRHDIFCDPIALMR*
Ga0136713_10044092	F063241	GGAGG	VLEDLQSSRKRFGLKHREGDLCWSLSESEGRKEKAECHLRRGDGLGNKRK*
Ga0136713_10044096	F028996	GAG	MRSKTLMSKINLQRGKLTVENRKSREKKRICSEVSVNSPGNPWSQSRRRNGRLWWEGFAEKESFKPGVKE*