Scaffold Ga0136580_112423

Overview

Basic Information

• Taxon OID: 3300011171
• Scaffold ID: Ga0136580_112423
• Source Dataset Name: Saline lake microbial communities from Deep lake, Antarctica - Metagenome #285
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Deep lake
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045454	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136580_1124231	F045454	N/A	MRSWRVLETIEKRLSGIEGKLEKVIRLEERVDKHEQVMARFGKRLDSGDERIKKVEMWQAEHNPDMIISTLKANSDTIDILRGKIGDLEDTSNVNRGHKDIGKGVLMWTSSILAAIIIYQATRGI*