Scaffold Ga0151672_164623

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_164623
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1101
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F063588	Metagenome / Metatranscriptome	129	N
F095495	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_1646232	F063588	GGAG	MQFNISGMFLNIEPRFGIGFDIESVESKPVWAVIDDKLTAMPFDGLVLLLPFFIVSLGNVWTEAEEDV*
Ga0151672_1646234	F019141	GGAG	MSKIKEELIGYQQNDGVAKDDHVRINEVTEYILYAMSVEEMQQAARQQIQHDLYTMARSDFNKVHYDTIGVHTK*
Ga0151672_1646235	F095495	AGGAG	VSRCKACDVIMTEAELKRTDYNTDKPLDLCYNCMSISTSAALAFENGGLLDADGEESLDLEALGFDISNN*