Scaffold Ga0151672_109703

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_109703
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2241
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_1097034	F040869	AGGAG	MNMKVFNQVYNELSLLQEENMDDLNIAEESLMAAMTFTMANAPSVLNGLCLISNTFNGILAEYTLKDIQLKGE*
Ga0151672_1097037	F029404	GGAGG	MTTIDFVEVELGGDSWKITWDVSNRKKIKTTGERHGLKYTIYSLTDLTPAQAYDIAMVQLEWLKKDQSYVI*
Ga0151672_1097038	F066135	N/A	NIKVKREDYESFTTITVTVTDKTDKDFELTLFTDKGFIPDMEVQDDND*