Scaffold Ga0151672_109319

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_109319
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14086
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012178	Metagenome	283	Y
F081889	Metagenome	114	N
F094544	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_10931914	F081889	GGAGG	MADLKVPLALVVAIIMQTVGGVWWISSQMHKIYHLEDQVKENASWIDQLYGDAEALIKFAEFTENKWAESYEADGYTRQWGTKAVELGQ*
Ga0151672_10931925	F094544	AGGA	MKHIIDYDHVCRVCQGKQRIFRWEYSPTTAKEVLVGEDCDYCVGGYRAITIGKKNKY*
Ga0151672_1093199	F012178	AGGTGG	MWVLLWVQLTTSAANGGEFEHYHVGSYTKQEVCELAKDEAKVLVTNEKSKVVCIKIEL*