Scaffold Ga0151672_102432

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_102432
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1483
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008724	Metagenome / Metatranscriptome	329	Y
F029404	Metagenome	188	N
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_1024321	F008724	GGAG	MSKIMNWMMSVEDFVNGYSYGGMNDFTVDEVVEDVGTYFKSGEAVKYARRYMKTQMEER*
Ga0151672_1024324	F029404	AGGAG	VTTIDFVEVELGGDKWKITWDYSRRKKVKTTGEKAGLMYTIYSLTELTPAQADDIAMMQLEWLKRDQVYVI*
Ga0151672_1024326	F066135	GAGG	MNGLRIHSVDNIKVKREDYESFTTITVTVTDKTDKDFELTLFTDKGFIPDMEVQDD*