Scaffold Ga0151672_101978

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_101978
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18503
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002077	Metagenome / Metatranscriptome	596	N
F016595	Metagenome	246	Y
F032860	Metagenome	179	Y
F034571	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_10197812	F002077	N/A	MNLLPQKTTQREISPQQEEFLTNLFENGGNVTDAALSAGYSKGSVTWLKTSLADEIIIRTKNVLSMHAFKAATRLVSTIDNPVPERGDDLRFRAAESLLNRVGLGKQETTNVNVQAVHGIVLLPPKKDVVIDG*
Ga0151672_10197814	F016595	N/A	MAYYFKCMECNYKETFNDTFEIPIVALEGSLADNETVICDGCISNKTRLKGNHIIINRSNNNANT*
Ga0151672_10197817	F032860	N/A	MGDETMKRYHLKKMSDLLDTLEIVSNNAKNKGHRSGFRCHQLAKELADQFNVFVPTLTTIITNKENKNNPTKISGNHQMTKGEHEIYKVIKSGVRIKVKDIHDLKLTDKTFNTIRQYVFILRKKGYVQSINVIGKHYKYYKAMPLSFNTMDRNLVNKLSV*
Ga0151672_10197821	F034571	N/A	QIEDRITELREEGMSDEDAIQKAQSEYDGQVNLVEDKALKIHERACMINKADIQRKLKQGCYPSEIVLSKVVDHLQANYNSSSQIRSTKFFCRDLLTEINDWTLEVANAE*