Scaffold Ga0151672_101254

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_101254
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3583
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042021	Metagenome	159	Y
F101910	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_1012542	F042021	GGAG	MDFEEIAKQELMWKDLVSRGEILSLQLLAKEAKDDLEKRIAAFLVARKKAIKLGNDTFEFRDRIHSIDEKTRETVMHSWASAKNISKRRALLAYRKAETNAWIYKTLLDKKRTSLFKKCKNLVLIGAGMYPYSMFDIQKKYKHIQQVGIEIDEKRSSIGKDLVEKSPAKEHIQIVTCDGNDYDYNYLLEDDLVFISCDVDNKKMMSTIMETCKAHIFICAPYEKTWLRALLVSNKITKKDGITSFLN*
Ga0151672_1012545	F101910	AGGAG	LTDYQICEIDIEKSSTAKYLEQNYSCEWGFNQDTNLDPFFHLRACIVNPVKIAAGKTIPIPTGIYPALKNPSFRIEVNSFTDLVYEQGLALADGISTFEFTFRNEIWLLIKNNSEQAQMIQPTQKIATFSVNYRPRMVLNYVDQIEDIAWKNSSAKSYIQKIKKKISPDIHDVKKDKHQDMDYSRGTIQQYVDGGFATHQLDINEVEGIIRPLQREETLKKPTGVKSSES*