Scaffold Ga0151672

Basic Information
Taxon OID	3300011129 Open in IMG/M
Scaffold ID	Ga0151672_100818 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300011129 Open in IMG/M

Scaffold ID

Ga0151672_100818 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Toyama Prefectural University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48103
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (80.30%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

48103

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (80.30%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.36555	Long. (^o)	137.72861	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Japan Sea near Toyama Prefecture, JAPAN

Coordinates

Lat. (^o)

37.36555

Long. (^o)

137.72861

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F033251	Metagenome	178	N
F049234	Metagenome	147	N
F058450	Metagenome	135	N
F064114	Metagenome	129	N
F067196	Metagenome	126	N
F087781	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_10081813	F049234	AGG	MMARIELELTAIVYDNSEFACEEYKIVAFVSDWNDGEKVTQAAGKAVQDHMEHSKKLCIGGCAKIFVDKEKVADAIFQNPEADEGLFDKAAELFGLEEGTVH*
Ga0151672_10081818	F064114	N/A	MGEKNMSGLNPTYIELARIENLRHQLIAQPTQAIVGRNYGAKVDLMAIAFDTIKTRDAWTIKDLARKMRVKDDVAQELLRNLVKEGHLESRPLHGEAVYEWPDRNPSKPLPRMGSRYR*
Ga0151672_10081820	F067196	AGGA	MPKFNNIEEKQKFFRNAMRKLDTGLPKEASPDLIKFFVLHVITAYDHDDCWDDVKGFVDFALKEKSQFDSARQAVEDADNMLDAITNSKDR*
Ga0151672_10081821	F033251	N/A	MSRLGFGRLVRTVLVLARLKPIKRMNVMADKNKRKLTPTKRAMKPWTGKEIDQLLEYKATGFKHSEIGELMGRSTKSINVKISKIRLGVEAASNPVEDLTPFQKNLDSTLFGEVSPDDKPKKPRKPRATKLSLTPQPKAADAFNVPKKPVYVAVVLVLVIVAWYLGSMS*
Ga0151672_10081824	F058450	AGGGGG	MIRLTDIAGRKTLAVTLGERTGEDIHYSEVCADDKYVYRHNSEYPDEVELYEIPLSMCAEVYDDVAYDKSPFVDPNNFSRDSQRGVRGFSREV*
Ga0151672_10081830	F000913	GGAG	MKHWEVEHNGEHFRLQWNEAATFNLQAPIGGQWVDYHCFTCYGIDSDQEALEHAMEVLEETEADVSS*
Ga0151672_10081836	F087781	GGA	MKWEIDKNDDADASFLVLDGQYPISFDRLTEKDWFMHLSEKGWVDMRHILPAFVAAYDAAGIPLSKQFFERHKTAFFRRAEEDYEILAQNLCSEKVHGGKLLWSLTYAYRASEACIDEILEDQYNFHPHSVISAIYDVGDAYSKHVVSRAIRVVSDELRYPTDPNLSIFEYREHHWLRTPNCGRKTMDLIVASLKSLIGKRMELSNGNV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0151672_100818

Overview

Ecosystem & Geography

Associated Families

Sequences