Scaffold Ga0151672_100640

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151672_100640

Scaffold Ga0151672_100640

Overview

Basic Information
Taxon OID	3300011129 Open in IMG/M
Scaffold ID	Ga0151672_100640 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1694
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	37.36555	Long. (^o)	137.72861	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056966	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_1006403	F056966	AGGAG	MAQLTVNEAGNSTFTDSFTVDVSDFSVANAGTLADRATKSFSYSIPAGAIVQKVAFKLNTAFDDSGSGDELQIEVGDDDDANGFIVAKEVHADATEVFYGFNDGAYFNTTGTNNANTNVVNGKLYAAAKTMAFLFTPDVSTGTAYSLNELTQGNITFFIEMARL*

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