Scaffold Ga0151672_100156

Overview

Basic Information

• Taxon OID: 3300011129
• Scaffold ID: Ga0151672_100156
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16569
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F040054	Metagenome	162	N
F048234	Metagenome	148	N
F066271	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151672_10015613	F048234	N/A	MWNFEGRSTMQIAIQISKQVEDWDKFVDELEAIEVTAHAEDYDAEAKVVTLLVDPKSIDDHYHPVGGRYPVEFEGRKEFVEEIGICVHSCKWQEHNIINAEEVCAKLEGLDYVN*
Ga0151672_10015614	F027807	AGAAGG	MSIKFVEPKPIKAELIQELDSLVGQLHNLSIYKPMPFHVQEAAMEARMADFLELSEQSFIKGWTDCEEGIPCAEYQSDAYYNGFSECYRYENQGGQ*
Ga0151672_10015623	F040054	GAGG	MITLPILSMPLPDGGSVVCRVESIIGATSNMRNEELTDVYVEVMCPEGITIDVDIDSFTQSWLAALITPMSEMREDHGMH*
Ga0151672_10015626	F066271	AGGAGG	MCVQSQRQFFAERHHIVVTDRTAELLARLGRDKGVGEEEYLKRLSRHPNEDHFIAEIARHYG*