Scaffold Ga0151669_114030

Overview

Basic Information

• Taxon OID: 3300011128
• Scaffold ID: Ga0151669_114030
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2277
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007621	Metagenome / Metatranscriptome	348	Y
F017047	Metagenome / Metatranscriptome	243	Y
F031294	Metagenome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151669_1140302	F017047	GGAG	MNTETDYKNELVQTLWDLFKEVHGVRPRGMGYEKYSVTDLEHEVARLQRSLEEEIRHEREMEDRAINACMDCGASDIATAMRWLEDAYEMEWV*
Ga0151669_1140304	F031294	N/A	MLQSNLLGDIQMKFEMLDLFLIAMLMVGVFFGLAMLSLYGVGYMTWLSWTMFGCSAWCLICGWGIVAYNLENRNG*
Ga0151669_1140305	F007621	GAGG	MQNSTSKSLAVVNNTLEAEGFALAKEWKSITKGDKARFTKATKADGFDTRLGKLMQKLKAEGGERISSDRLKDCGINGIDKRRRSEALWFVENETACRDFIKASKKGFTSLTALQAAMKPKAAPKPKADTETPIGSEADDKSKVGLDSEADKVETKSASDIAMQALLDCEMNGISKASFLAALKEQLEMLDAANSRAAA*